More capabilities for those inclined to delve into the ImageJ Application Programming Interface (i.e., API - see below), and/or use several of the useful PhysImage-specific extensions to the ImageJ core. Generation in a high-throughput manner that can take advantage ofīasic functionality (macros, plugins, etc.), as well as providing much However, PhysImage can be run stand-alone like ImageJ or FijiĪnd is quite useful for automating complex analyses and figure This is the critical component for the 'acquisition' use of the software mentioned above. PhysImage is most useful when combined with the Micro-Manager acquisition plugin to ImageJ. Means of re-running previous defined scripts. Software, through the scripting language, while also providing a simple This provides a mechanism for both interactively controlling the The "gluing" is accomplished using the Open Source Java implementation of the Python scripting language called Jython. Several Open Source libraries and additional new core code. Unlike Fiji, PhysImage is also a fork of the core ImageJĬodebase that was necessitated due to a need to glue multipleĬomponents together in an interactive way that critically relies on Presentation of Ca 2+ -imaging and electrophysiology data in a rapid manner. The PhysImage software is a distribution of ImageJ, in a vein similar to Fiji,īut designed to aid neurophysiologists in the acquisition, analyses, and
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